Publications

Yoni Schirris

2023

  1. Generalizable biomarker prediction from cancer pathology slides with self-supervised deep learning: A retrospective multi-centric study
    Cell Reports Medicine
    J. M. Niehues, P. Quirke, N. P. West, H. I. Grabsch, M. Van Treeck, Y. Schirris, G. P. Veldhuizen, G. G. Hutchins, S. D. Richman, S. Foersch, T. J. Brinker, J. Fukuoka, A. Bychkov, W. Uegami, D. Truhn, H. Brenner, A. Brobeil, M. Hoffmeister, J. N. Kather, 2023, 4;(4):100980
    doi paper (open access)
    Abstract
  2. 1240P Multi-centric validation of an AI-based sTIL% scoring model for breast cancer H&E whole-slide images
    Annals of Oncology
    Y. Schirris, R. Voorthuis, M. Opdam, E. Gavves, R. De Menezes, S. Linn, H. Horlings, 2023, 34
    doi
    Abstract

2022

  1. DeepSMILE: Contrastive self-supervised pre-training benefits MSI and HRD classification directly from H&E whole-slide images in colorectal and breast cancer
    Medical Image Analysis
    Y. Schirris, E. Gavves, I. Nederlof, H. M. Horlings, J. Teuwen, 2022, 79
    doi
    Abstract
  2. WeakSTIL: weak whole-slide image level stromal tumor infiltrating lymphocyte scores are all you need
    Medical Imaging 2022: Digital and Computational Pathology
    Y. Schirris, M. Engelaer, A. Panteli, H. M. Horlings, E. Gavves, J. Teuwen, 2022
    doi preprints
    Abstract
  3. HRD-related morphology discovery in breast cancer by controlling for confounding factors
    Cell Reports Medicine
    Y. Schirris, H. M. Horlings, 2022, 3;(12):100873
    doi paper (open access)
    Abstract